{"id":1433,"date":"2026-08-11T07:11:56","date_gmt":"2026-08-11T07:11:56","guid":{"rendered":"https:\/\/sites.abo.fi\/madness\/?post_type=events&#038;p=1433"},"modified":"2026-08-11T07:11:57","modified_gmt":"2026-08-11T07:11:57","slug":"single-cell-rna-seq-data-analysis-course","status":"publish","type":"events","link":"https:\/\/sites.abo.fi\/madness\/events\/single-cell-rna-seq-data-analysis-course\/","title":{"rendered":"Single-cell RNA-seq Data Analysis Course"},"content":{"rendered":"\n<p class=\"wp-block-paragraph\"><strong>Single-cell RNA-seq Data Analysis Course<\/strong><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">16<sup>th<\/sup>\u201317<sup>th<\/sup> September<br>Onsite event<br>in Teutori and Dentalia, Turku<br><a href=\"https:\/\/biocityturku.fi\/wp-content\/uploads\/A4-Single-cell_RNA-seq_Data_Analysis.png\">Flyer<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">This course is a hands-on, beginner-friendly course covering the core single-cell RNA-seq analysis workflow, designed for researchers who are new to scRNA-seq data analysis. Participants watch pre-recorded lectures before attending, so that classroom time is used for exercises, discussion, and guided analysis. In addition to the core workflow, the course includes manual cell type annotation and an introduction to available bioinformatics computing resources. No prior knowledge of Unix, R, or Python is required. Hands-on exercises use a graphical, user-friendly analysis platform and the analysis platform remains available for your own data after the course. Study points are awarded upon completion.<\/p>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Course topics<\/strong><br>Quality control and filtering<br>Normalisation and variable gene selection<br>Dimensionality reduction (PCA)<br>Clustering and UMAP visualization<br>Marker gene identification<br>Automated cell type annotation (SingleR)<br>Manual cell type annotation<br>Two-sample integration and comparison<br>Differential expression analysis<br>ELIXIR and CSC computing resources<\/p>\n\n\n\n<p class=\"wp-block-paragraph\">Seats are limited to 30 participants.<br>Registration in <a href=\"http:\/\/bit.ly\/scRNAdata\">http:\/\/bit.ly\/scRNAdata<\/a><\/p>\n\n\n\n<p class=\"wp-block-paragraph\">More information from Iivari Kleino (<a href=\"mailto:Iivari.kleino@utu.fi\">Iivari.kleino@utu.fi<\/a>)<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Single-cell RNA-seq Data Analysis Course 16th\u201317th SeptemberOnsite eventin Teutori and Dentalia, TurkuFlyer This course is a hands-on, beginner-friendly course covering the core single-cell RNA-seq analysis workflow, designed for researchers who are new to scRNA-seq data analysis. Participants watch pre-recorded lectures before attending, so that classroom time is used for exercises, discussion, and guided analysis. In&#8230;<\/p>\n","protected":false},"featured_media":0,"template":"","meta":{"_acf_changed":true,"inline_featured_image":false,"_kad_blocks_custom_css":"","_kad_blocks_head_custom_js":"","_kad_blocks_body_custom_js":"","_kad_blocks_footer_custom_js":"","_kad_post_transparent":"","_kad_post_title":"","_kad_post_layout":"","_kad_post_sidebar_id":"","_kad_post_content_style":"","_kad_post_vertical_padding":"","_kad_post_feature":"","_kad_post_feature_position":"","_kad_post_header":false,"_kad_post_footer":false,"_kad_post_classname":""},"categories":[],"tags":[],"class_list":["post-1433","events","type-events","status-publish","hentry"],"acf":[],"lang":"en","translations":{"en":1433},"taxonomy_info":[],"featured_image_src_large":false,"author_info":[],"comment_info":"","pll_sync_post":[],"_links":{"self":[{"href":"https:\/\/sites.abo.fi\/madness\/wp-json\/wp\/v2\/events\/1433","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sites.abo.fi\/madness\/wp-json\/wp\/v2\/events"}],"about":[{"href":"https:\/\/sites.abo.fi\/madness\/wp-json\/wp\/v2\/types\/events"}],"wp:attachment":[{"href":"https:\/\/sites.abo.fi\/madness\/wp-json\/wp\/v2\/media?parent=1433"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/sites.abo.fi\/madness\/wp-json\/wp\/v2\/categories?post=1433"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/sites.abo.fi\/madness\/wp-json\/wp\/v2\/tags?post=1433"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}